# Gerry Tonkin-Hill

Up to date code and documentation for my software can be found on GitHub.

## Software

### panaroo

An error aware pipeline for pangenome investigation

### fastbaps

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

### pairsnp

A set of scripts for very quickly obtaining pairwise SNP distance matrices from multiple sequence alignments using sparse matrix libraries to improve performance.

### rhierbaps

R package implementing the hierBAPS algorithm.

### starmie

R package developed with Stuart Lee to make post processing of population structure software output easier.